# MLatom 3.25.5 was tested in an environment with these package versions (Python 3.11.5, Linux x86-64). # Give the file to pip as constraints, which fix versions but install nothing by themselves, e.g.: # pip install mlatom -c mlatom_constraints.txt absl-py==2.3.1 aimnet==0.0.1 aiohappyeyeballs==2.6.1 aiohttp==3.13.1 aiosignal==1.4.0 alembic==1.17.0 annotated-types==0.8.0 antlr4-python3-runtime==4.9.3 ase==3.26.0 astunparse==1.6.3 attrs==25.4.0 autograd==1.8.0 bcrypt==5.0.0 beartype==0.22.2 bibtexparser==1.4.3 Bottleneck==1.6.0 certifi==2025.10.5 cffi==2.0.0 charset-normalizer==3.4.4 cli_helpers==2.14.0 click==8.1.7 cloudpickle==3.1.1 colorlog==6.10.1 ConfigArgParse==1.7.1 configobj==5.0.9 contourpy==1.3.3 cryptography==46.0.3 cycler==0.12.1 dask==2025.10.0 decorator==5.2.1 Deprecated==1.2.18 distributed==2025.10.0 docker-pycreds==0.4.0 docstring_parser==0.17.0 e3nn==0.5.0 einops==0.8.1 et_xmlfile==2.0.0 fabric==3.2.2 filelock==3.20.0 flatbuffers==25.9.23 fonttools==4.60.1 fortranformat==2.0.3 frozenlist==1.8.0 fsspec==2025.9.0 future==1.0.0 gast==0.6.0 geometric==1.1 gitdb==4.0.12 GitPython==3.1.45 google-pasta==0.2.0 greenlet==3.2.4 grpcio==1.75.1 h5py==3.15.1 hydra-core==1.3.2 hyperopt==0.2.7 idna==3.11 importlib_metadata==8.7.0 intel-cmplr-lib-ur==2025.2.1 intel-openmp==2025.2.1 invoke==2.2.1 Jinja2==3.1.6 joblib==1.5.2 julia==0.6.2 keras==3.11.3 kiwisolver==1.4.9 lark-parser==0.12.0 libclang==18.1.1 lightning==2.5.5 lightning-utilities==0.15.2 llvmlite==0.43.0 lmdb==1.7.5 locket==1.0.0 Mako==1.3.10 Markdown==3.9 markdown-it-py==4.0.0 MarkupSafe==3.0.3 matplotlib==3.10.7 matscipy==1.1.1 mdurl==0.1.2 memory-profiler==0.61.0 mkl==2025.2.0 mkl-service==2.5.2 ml_dtypes==0.5.3 mlatom==3.25.5 monty==2025.3.3 mpmath==1.3.0 msgpack==1.1.2 multidict==6.7.0 namex==0.1.0 narwhals==2.8.0 natsort==8.4.0 networkx==3.5 numba==0.60.0 numexpr==2.14.1 numpy==1.26.4 nvidia-cublas-cu12==12.6.4.1 nvidia-cuda-cupti-cu12==12.6.80 nvidia-cuda-nvrtc-cu12==12.6.77 nvidia-cuda-runtime-cu12==12.6.77 nvidia-cudnn-cu12==9.5.1.17 nvidia-cufft-cu12==11.3.0.4 nvidia-cufile-cu12==1.11.1.6 nvidia-curand-cu12==10.3.7.77 nvidia-cusolver-cu12==11.7.1.2 nvidia-cusparse-cu12==12.5.4.2 nvidia-cusparselt-cu12==0.6.3 nvidia-nccl-cu12==2.26.2 nvidia-nvjitlink-cu12==12.6.85 nvidia-nvtx-cu12==12.6.77 omegaconf==2.3.0 openbabel-wheel==3.1.1.23 openpyxl==3.1.5 opt_einsum==3.4.0 opt-einsum-fx==0.1.4 optree==0.17.0 optuna==4.5.0 orjson==3.11.3 packaging==25.0 palettable==3.3.3 pandas==2.3.3 paramiko==4.0.0 partd==1.4.2 patsy==1.0.1 pgcli==4.4.0 pgspecial==2.2.1 pillow==12.0.0 pkbar==0.5 platformdirs==4.5.0 plotly==6.3.1 prettytable==3.16.0 propcache==0.4.1 protobuf==5.29.5 psutil==7.1.0 py4j==0.10.9.9 pycparser==2.23 pydantic==2.13.5 pydantic_core==2.46.5 Pygments==2.19.2 pyh5md==1.2.0 pymatgen==2025.10.7 PyNaCl==1.6.0 pyparsing==3.2.5 pyscf==2.10.0 python-dateutil==2.9.0.post0 python_hostlist==2.3.0 pytorch-ignite==0.5.3 pytorch-lightning==2.5.5 pytz==2025.2 pyvibdmc==1.3.9 PyYAML==6.0.3 rdkit==2025.9.1 requests==2.32.5 rich==14.2.0 rmsd==1.6.4 ruamel.yaml==0.18.15 ruamel.yaml.clib==0.2.14 scikit-learn==1.7.2 scipy==1.17.0 sentry-sdk==2.42.0 setproctitle==1.3.7 six==1.17.0 smmap==5.0.2 sortedcontainers==2.4.0 spglib==2.6.0 SQLAlchemy==2.0.44 sqlparse==0.5.5 statsmodels==0.14.5 sympy==1.14.0 tabulate==0.10.0 tbb==2022.2.0 tblib==3.1.0 tcmlib==1.4.0 tensorboard==2.20.0 tensorboard-data-server==0.7.2 tensorflow==2.20.0 termcolor==3.1.0 threadpoolctl==3.6.0 toolz==1.1.0 torch==2.7.0 torch-ema==0.3 torchani==2.2.4 torchmetrics==1.8.2 tornado==6.5.2 tqdm==4.67.1 triton==3.3.0 typing_extensions==4.15.0 typing-inspection==0.4.4 tzdata==2025.2 tzlocal==5.3.1 umf==0.11.0 uncertainties==3.2.3 urllib3==2.5.0 wandb==0.18.7 wcwidth==0.2.14 Werkzeug==3.1.3 wrapt==1.17.3 xgboost==3.1.0 yarl==1.22.0 zict==3.0.0 zipp==3.23.0